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| extensions [2021/03/15 08:39] – [Lattice Polytopes and Toric Geometry] paffenholz | extensions [2021/12/07 11:31] – [Phylogenetics] Update some dead links lkastner |
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| ===== Phylogenetics ===== | ===== Phylogenetics ===== |
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| * Sven Herrmann: [[http://www.uea.ac.uk/computing/quasidec|QuasiDec]]. This extension contains an algorithm for computing the block decomposition of a quasi-median graph obtained from a set of partitions or a sequence alignment. | * Sven Herrmann: [[https://www.uea.ac.uk/groups-and-centres/computational-biology/software/quasidec|QuasiDec]]. This extension contains an algorithm for computing the block decomposition of a quasi-median graph obtained from a set of partitions or a sequence alignment. |
| * Sven Herrmann and Andreas Spillner: [[http://www.uea.ac.uk/computing/comrit|CoMRiT]]. This extensions contains a new application metric introducing finite metric spaces as objects. The core feature is an algorithm to compute a realisation of a finite metric space using the tight-span, as described in Herrmann, Moulton, Spillner: Computing Realizations of Finite Metric Spaces. | * Sven Herrmann and Andreas Spillner: [[https://www.uea.ac.uk/groups-and-centres/computational-biology/software/comrit|CoMRiT]]. This extensions contains a new application metric introducing finite metric spaces as objects. The core feature is an algorithm to compute a realisation of a finite metric space using the tight-span, as described in Herrmann, Moulton, Spillner: Computing Realizations of Finite Metric Spaces. |
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