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| extensions [2021/03/15 08:39] – [Lattice Polytopes and Toric Geometry] paffenholz | extensions [2021/12/07 13:20] (current) – panizzut |
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| ===== Tropical Geometry ===== | ===== Tropical Geometry ===== |
| | * Ewgenij Gawrilow, Michael Joswig, Benjamin Schröter: [[extensions:polytropes|polytropes]] |
| | * Alheydis Geiger and Marta Panizzut: [[extensions:tropicalquarticcurves|TropicalQuarticCurves]] |
| * Michael Joswig, Marta Panizzut, Bernd Sturmfels: [[extensions:tropicalcubics|Tropical Cubics]] | * Michael Joswig, Marta Panizzut, Bernd Sturmfels: [[extensions:tropicalcubics|Tropical Cubics]] |
| * Ewgenij Gawrilow, Michael Joswig, Benjamin Schröter: [[extensions:polytropes|polytropes]] | |
| * Simon Hampe: [[https://github.com/simonhampe/atint|Algorithmic tropical intersection theory]] (now bundled with polymake) | * Simon Hampe: [[https://github.com/simonhampe/atint|Algorithmic tropical intersection theory]] (now bundled with polymake) |
| * Silke Horn: [[http://solros.de/polymake/tropmat/|Tropical Oriented Matroids]] | * Silke Horn: [[http://solros.de/polymake/tropmat/|Tropical Oriented Matroids]] |
| ===== Phylogenetics ===== | ===== Phylogenetics ===== |
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| * Sven Herrmann: [[http://www.uea.ac.uk/computing/quasidec|QuasiDec]]. This extension contains an algorithm for computing the block decomposition of a quasi-median graph obtained from a set of partitions or a sequence alignment. | * Sven Herrmann: [[https://www.uea.ac.uk/groups-and-centres/computational-biology/software/quasidec|QuasiDec]]. This extension contains an algorithm for computing the block decomposition of a quasi-median graph obtained from a set of partitions or a sequence alignment. |
| * Sven Herrmann and Andreas Spillner: [[http://www.uea.ac.uk/computing/comrit|CoMRiT]]. This extensions contains a new application metric introducing finite metric spaces as objects. The core feature is an algorithm to compute a realisation of a finite metric space using the tight-span, as described in Herrmann, Moulton, Spillner: Computing Realizations of Finite Metric Spaces. | * Sven Herrmann and Andreas Spillner: [[https://www.uea.ac.uk/groups-and-centres/computational-biology/software/comrit|CoMRiT]]. This extensions contains a new application metric introducing finite metric spaces as objects. The core feature is an algorithm to compute a realisation of a finite metric space using the tight-span, as described in Herrmann, Moulton, Spillner: Computing Realizations of Finite Metric Spaces. |
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