application tropical

This application concentrates on tropical hypersurfaces and tropical polytopes. It provides the functionality for the computation of basic properties. Visualization and various constructions are possible.

imports from:

• application common
• application graph

uses:

• application fan
• application group
• application ideal
• application matroid
• application polytope
• application topaz

• CovectorLattice:
  

• Curve:
  Abstract tropical curve, possibly with marked edges, edge lengths, vertex weights. Additional functionality for moduli space computations.

• Cycle:
  A tropical cycle is a weighted, balanced, pure polyhedral complex. It is given as a polyhedral complex in tropical projective coordinates. To be precise: Each row of VERTICES and LINEALITY_SPACE has a leading 1 or 0, depending on whether it is a vertex or a ray. The remaining n coordinates are interpreted as an element of Rⁿ modulo (1,..,1). IMPORTANT NOTE: VERTICES are assumed to be normalized such that the first coordinate (i.e. column index 1) is 0. If your input is not of that form, use PROJECTIVE_VERTICES. Note that there is a convenience method thomog, which converts affine coordinates into projective coordinates.

• Hypersurface:
  Tropical hypersurface in the tropical projective torus R^d/R1. This is a special instance of a Cycle: It is the tropical locus of a homogeneous polynomial over the tropical numbers. Note: Homogeneity of the MONOMIALS is never checked.

• LinesInCubic:
  This represents the result of the method lines_in_cubic. It contains: The tropical polynomial representing the surface, the surface itself as a Cycle and lists of lines and families of different types, each starting with LIST_… The object also has methods, starting with array_… that return the corresponding LIST_… as a perl array. The different (lists of) lines can be visualized nicely with visualize_in_surface.

• MatroidRingCycle:
  A matroid ring cycle is a tropical cycle which lies in the intersection ring of matroids fans. I.e. it is a linear combination of matroids fans (of the same dimension). Cycle sum and intersection are implemented through the combinatorics of the underlying matroids. Note that the set of loopfree nested matroids is a basis for this ring (e.g. as a Z-module). Hence every MatroidRingCycle is represented as a linear combination of nested matroids. The nested matroids are encoded via their maximal transversal presentations in NESTED_PRESENTATIONS. The corresponding coefficients are found in NESTED_COEFFICIENTS.

• Morphism:
  A morphism is a function between cycles which is locally affine linear and respects the lattices. It is defined by a DOMAIN, which is a cycle, and values on this domain, VERTEX_VALUES and LINEALITY_VALUES, much like TropicalRationalFunction. Alternatively, it can be defined as a global affine linear function by giving a matrix and a translation vector.

• Patchwork:
  This encodes a “combinatorial” patchworking structure on a hypersurface. That is, it requires the support of the dual triangulation to be the full set of lattice points in a scaled simplex. See Joswig and Vater, ICMS 2020, doi:10.1007/978-3-030-52200-1_20.

• Polytope:
  A tropical polytope is the tropical convex hull of finitely many points or the finite intersection of tropical halfspaces in a tropical projective space. Many combinatorial properties depend on POINTS. Note: VERTICES are used for POINTS if the tropical polytope is initialized by INEQUALITIES.

• RationalCurve:
  An n-marked rational curve, identified by its SETS, i.e. its partitions of {1,…,n} and its COEFFICIENTS, i.e. the lengths of the corresponding edges.

• TropicalRationalFunction:
  A rational function on a polyhedral complex. It can be described by giving its DOMAIN, a Cycle, and values on this domain - which are encoded in the properties VERTEX_VALUES and LINEALITY_VALUES. Alternatively, it can be defined by a tropical quotient of homogeneous tropical polynomials of the same degree i.e. by giving NUMERATOR and DENOMINATOR. A DOMAIN can be defined additionally (though one should take care that both functions are actually piecewise affine linear on the cells), otherwise it will be computed as the common refinement of the domains of affine linearity of the two polynomials.

• VoronoiDiagram:
  Voronoi diagram with respect to the tropical metric in the tropical projective torus. Its combinatorics is controlled by a POLYTROPE_PARTITION. See P. Criado, M. Joswig, P. Santos: Tropical bisectors and Voronoi diagrams, arXiv:1906.10950

These functions deal with abstract rational n-marked curves.

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insert_leaves(RationalCurve curve, Vector<Int> nodes)

Takes a RationalCurve and a list of node indices. Then inserts additional leaves (starting from N_LEAVES+1) at these nodes and returns the resulting RationalCurve object

Parameters:

RationalCurve curve: A RationalCurve object

Vector<Int> nodes: A list of node indices of the curve

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matroid_coordinates_from_curve<Addition>(RationalCurve r)

Takes a rational curve and converts it into the corresponding matroid coordinates in the moduli space of rational curves (including the leading 0 for a ray!)

Type Parameters:

Addition: Min or Max, i.e. which coordinates to use.

Parameters:

RationalCurve r: A rational n-marked curve

Returns:

Vector<Rational>

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rational_curve_from_cone(Cycle<Addition> X, Int n_leaves, Int coneIndex)

This takes a weighted complex X that is supposed to be of the form M_0,n x Y for some Y (It assumes that M_0,n occupies the first coordinates) and an index of a maximal cone of that complex. It then computes a rational curve corresponding to an interior point of that cone (ignoring the second component Y)

Parameters:

Cycle<Addition> X: A weighted complex of the form M_0,n x Y

Int n_leaves: The n in M_0,n. Needed to determine the dimension of the M_0,n component

Int coneIndex: The index of the maximal cone

Returns:

RationalCurve

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rational_curve_from_matroid_coordinates<Addition>(Vector<Rational> v)

Takes a vector from $ Q^{(n-1) over 2} $ that lies in $ M_{0,n} $ (in its matroid coordinates) and computes the corresponding rational curve. In the isomorphism of the metric curve space and the moduli coordinates the last leaf is considered as the special leaf

Type Parameters:

Addition: Min or Max (i.e. what are the matroid coordinates using)

Parameters:

Vector<Rational> v: A vector in the moduli space (WITH leading coordinate).

Returns:

RationalCurve

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rational_curve_from_metric(Vector<Rational> v)

Takes a vector from Q^(n over 2) that describes an n-marked rational abstract curve as a distance vector between its leaves. It then computes the curve corresponding to this vector.

Parameters:

Vector<Rational> v: A vector of length (n over 2). Its entries are interpreted as the distances d(i,j) ordered lexicographically according to i,j. However, they need not be positive, as long as v is equivalent to a proper metric modulo leaf lengths.

Returns:

RationalCurve

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rational_curve_from_rays<Addition>(Matrix<Rational> rays)

This takes a matrix of rays of a given cone that is supposed to lie in a moduli space M_0,n and computes the rational curve corresponding to an interior point. More precisely, if there are k vertices in homogeneous coordinates, it computes 1/k * (sum of these vertices), then it adds each directional ray. It then returns the curve corresponding to this point

Type Parameters:

Addition: Min or Max, where the coordinates live.

Parameters:

Matrix<Rational> rays: The rays of the cone, in tropical homogeneous coordinates.

Returns:

RationalCurve

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rational_curve_immersion<Addition>(Matrix<Rational> delta, RationalCurve type)

This function creates an embedding of a rational tropical curve using a given abstract curve and degree

Type Parameters:

Addition: Min or Max

Parameters:

Matrix<Rational> delta: The degree of the curve in tropical projectve coordinates without leading coordinate. The number of rows should correspond to the number of leaves of type and the number of columns is the dimension of the space in which the curve should be realized

RationalCurve type: An abstract rational curve

Returns:

Cycle<Addition>

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rational_curve_list_from_matroid_coordinates<Addition>(Matrix<Rational> m)

Takes a matrix whose rows are elements in the moduli space M_0,n in matroid coordinates. Returns a list, where the i-th element is the curve corr. to the i-th row in the matrix

Type Parameters:

Addition: Mir or Max (i.e. what are the matroid coordinates using

Parameters:

Matrix<Rational> m: A list of vectors in the moduli space (with leading coordinate).

Returns:

RationalCurve

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rational_curve_list_from_metric(Matrix<Rational> m)

Takes a matrix whose rows are metrics of rational n-marked curves. Returns a list, where the i-th element is the curve corr. to the i-th row in the matrix

Parameters:

Matrix<Rational> m

Returns:

RationalCurve

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sum_curves(RationalCurve An, Vector<Rational> v)

This function takes a vector of coefficients a_i and a list of RationalCurves c_i and computes sum(a_i * c_i). In particular, it also checks, whether the result lies in M_0,n. If not, it returns undef

Parameters:

RationalCurve An: arbitrary list of RationalCurve objects

Vector<Rational> v: A list of coefficients. Superfluous coefficients are ignored, missing ones replaced by +1(!)

Returns:

RationalCurve

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testFourPointCondition(Vector<Rational> v)

Takes a metric vector in Q^{(n over 2)} and checks whether it fulfills the four-point condition, i.e. whether it lies in M_0,n. More precisely it only needs to be equivalent to such a vector

Parameters:

Vector<Rational> v: The vector to be checked

Returns:

Int

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These functions deal with affine and projective coordinates, conversion between those and properties like dimension that change in projective space.

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morphism_from_affine<Addition>(Matrix<Rational> A, Vector<Rational> v, Int domain_chart, Int target_chart)

Takes a representation of a morphism on affine coordinates and converts it to projective ones.

Type Parameters:

Addition: Min or Max

Parameters:

Matrix<Rational> A: . The matrix of the morphism x |→ Ax + v in affine coordinates.

Vector<Rational> v: . The translate of the morphism x |→ Ax + v in affine coordinates.

Int domain_chart: Which coordinate index of the homogenized domain is shifted to zero to identify it with the domain of the affine function. 0 by default.

Int target_chart: Which coordinate of the homogenized target space is shifted to zero to identify it with the target of the affine function. 0 by default.

Returns:

Morphism

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rational_fct_from_affine_denominator(Polynomial<TropicalNumber<Addition>> p, Int chart)

This takes a tropical polynomial p defined on tropical affine coordinates and turns it into the rational function (1/p) on tropical homogeneous coordinates

Parameters:

Polynomial<TropicalNumber<Addition>> p: A polynomial on affine coordinates.

Int chart: The index of the homogenizing coordinate. 0 by default.

Returns:

TropicalRationalFunction

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rational_fct_from_affine_denominator(String p, Int chart)

Same as rational_fct_from_affine_denominator(Polynomial), except that it takes a string which it converts to a tropical polynomial using toTropicalPolynomial.

Parameters:

String p: A string that will be converted to a tropical polynomial

Int chart: The index of the homogenizing coordinate. 0 by default.

Returns:

TropicalRationalFunction

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rational_fct_from_affine_numerator(Polynomial<TropicalNumber<Addition>> p, Int chart)

This takes a tropical polynomial defined on tropical affine coordinates and turns it into a rational function on tropical homogeneous coordinates

Parameters:

Polynomial<TropicalNumber<Addition>> p: A polynomial on affine coordinates.

Int chart: The index of the homogenizing coordinate. 0 by default.

Returns:

TropicalRationalFunction

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rational_fct_from_affine_numerator(String p, Int chart)

Same as rational_fct_from_affine_numerator(Polynomial), except that it takes a string which it converts to a tropical polynomial using toTropicalPolynomial.

Parameters:

String p: A string that will be converted to a tropical polynomial

Int chart: The index of the homogenizing coordinate. 0 by default.

Returns:

TropicalRationalFunction

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tdehomog(Matrix<Rational> A, Int chart, Bool has_leading_coordinate)

This is the inverse operation of thomog. It assumes a list of rays and vertices is given in tropical projective coordinates and returns a conversion into affine coordinates.

Parameters:

Matrix<Rational> A: The matrix. Can also be given as an anonymous array.

Int chart: Optional. Indicates which coordinate should be shifted to 0. If there is a leading coordinate, the first column of the matrix will remain untouched and the subsequent ones are numbered from 0. The default value for this is 0.

Bool has_leading_coordinate: Whether the matrix has a leading 1/0 to indicate whether a row is a vertex or a ray. In that case, this coordinate is not touched. This is true by default.

Returns:

Matrix<Rational>

Example:

Dehomogenize vector with leading coordinate by shifting entry at index 0 to 0 and forgetting it.

 > print tdehomog([[1,3,5,8]]);
 1 2 5

Example:

Dehomogenize vector without leading coordinate by shifting entry at index 2 to 0 and forgetting it.

 > print tdehomog([[2,3,4,5]], 2, 0);
 -2 -1 1

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thomog(Matrix<Rational> A, Int chart, Bool has_leading_coordinate)

Converts tropical affine to tropical projective coordinates. It takes a matrix of row vectors in R^n-1 and identifies the latter with Rⁿ mod (1,..,1) by assuming a certain coordinate has been set to 0. I.e. it will return the matrix with a 0 column inserted at the position indicated by chart

Parameters:

Matrix<Rational> A: The matrix. Can also be given as an anonymous perl array reference.

Int chart: Optional. Indicates, which coordinate of Rⁿ mod (1,..,1) should be set to 0 to identify it with R^n-1. Note that if there is a leading coordinate, the first column is supposed to contain the 1/0-coordinate indicating whether a row is a vertex or a ray and the remaining coordinates are then labelled 0,..,n-1. This option is 0 by default.

Bool has_leading_coordinate: Optional. Whether the matrix has a leading 1/0 to indicate whether a row is a vertex or a ray. In that case, this coordinate is not touched. This is true by default.

Returns:

Matrix<Rational>

Example:

Homogenize vectors with leading coordinate by inserting a 0-entry at index 0.

 > print thomog([[1,3,4],[0,5,6]]);
 1 0 3 4
 0 0 5 6

Example:

Homogenize a vector without leading coordinate by inserting a 0-entry at index 2.

 > print thomog([[2,3,4]], 2, 0);
 2 3 0 4

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These functions provide basic functionality related to polyhedral geometry, but not necessarily to tropical geometry

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affine_transform(Cycle<Addition> C, Matrix<Rational> M, Vector<Rational> T)

Computes the affine transform of a cycle under an affine linear map. This function assumes that the map is a lattice isomorphism on the cycle, i.e. no push-forward computations are performed, in particular the weights remain unchanged

Parameters:

Cycle<Addition> C: a tropical cycle

Matrix<Rational> M: The transformation matrix. Should be given in tropical projective coordinates and be homogeneous, i.e. the sum over all rows should be the same.

Vector<Rational> T: The translate. Optional and zero vector by default. Should be given in tropical projective coordinates (but without leading coordinate for vertices or rays). If you only want to shift a cycle, use shift_cycle.

Returns:

Cycle<Addition>

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affine_transform(Cycle<Addition> C, Morphism<Addition> M)

Computes the affine transform of a cycle under an affine linear map. This function assumes that the map is a lattice isomorphism on the cycle, i.e. no push-forward computations are performed, in particular the weights remain unchanged

Parameters:

Cycle<Addition> C: a tropical cycle

Morphism<Addition> M: A morphism. Should be defined via MATRIX and TRANSLATE, though its DOMAIN will be ignored.

Returns:

Cycle<Addition>

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cartesian_product(Cycle cycles)

Computes the cartesian product of a set of cycles. If any of them has weights, so will the product (all non-weighted cycles will be treated as if they had constant weight 1)

Parameters:

Cycle cycles: a list of Cycles

Returns:

Cycle

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check_cycle_equality(Cycle<Addition> X, Cycle<Addition> Y, Bool check_weights)

This takes two pure-dimensional polyhedral complexes and checks if they are equal i.e. if they have the same lineality space, the same rays (modulo lineality space) and the same cones. Optionally, it can also check if the weights are equal

Parameters:

Cycle<Addition> X: A weighted complex

Cycle<Addition> Y: A weighted complex

Bool check_weights: Whether the algorithm should check for equality of weights. This parameter is optional and true by default

Returns:

Bool

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coarsen(Cycle<Addition> complex, Bool testFan)

Takes a tropical variety on which a coarsest polyhedral structure exists and computes this structure.

Parameters:

Cycle<Addition> complex: A tropical variety which has a unique coarsest polyhedral structure

Bool testFan: (Optional, FALSE by default). Whether the algorithm should perform some consistency checks on the result. If true, it will check the following:

1. That equivalence classes of cones have convex support
2. That all equivalence classes have the same lineality space

If any condition is violated, the algorithm throws an exception Note that it does not check whether equivalence classes form a fan This can be done via check_fan afterwards, but it is potentially slow.

Returns:

Cycle<Addition>

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contains_point(Cycle A, Vector<Rational> point)

Takes a weighted complex and a point and computed whether that point lies in the complex

Parameters:

Cycle A: weighted complex

Vector<Rational> point: An arbitrary vector in the same ambient dimension as complex. Given in tropical projective coordinates with leading coordinate.

Returns:

Bool

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fan_decomposition(Cycle<Addition> C)

This computes the local fans at all (nonfar) vertices of a tropical cycle

Parameters:

Cycle<Addition> C: A tropical cycle

Returns:

Cycle<Addition>

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insert_rays(Cycle<Addition> F, Matrix<Rational> R)

Takes a cycle and a list of rays/vertices in tropical projective coordinates with leading coordinate and triangulates the fan such that it contains these rays

Parameters:

Cycle<Addition> F: A cycle (not necessarily weighted).

Matrix<Rational> R: A list of normalized vertices or rays Note that the function will NOT subdivide the lineality space, i.e. rays that are equal to an existing ray modulo lineality space will be ignored.

Returns:

Cycle<Addition>

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intersect_container(Cycle cycle, Cycle container, Bool forceLatticeComputation)

Takes two Cycles and computes the intersection of both. The function relies on the fact that the second cycle contains the first cycle to compute the refinement correctly The function copies WEIGHTS, LATTICE_BASES and LATTICE_GENERATORS in the obvious manner if they exist.

Parameters:

Cycle cycle: An arbitrary Cycle

Cycle container: A cycle containing the first one (as a set) Doesn't need to have any weights and its tropical addition is irrelevant.

Bool forceLatticeComputation: Whether the properties LATTICE_BASES and LATTICE_GENERATORS of cycle should be computed before refining. False by default.

Returns:

Cycle

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recession_fan(Cycle complex)

Computes the recession fan of a tropical variety. WARNING: This is a highly experimental function. If it works at all, it is likely to take a very long time for larger objects.

Parameters:

Cycle complex: A tropical variety

Returns:

Cycle

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set_theoretic_intersection(Cycle A, Cycle B)

Computes the set-theoretic intersection of two cycles and returns it as a polyhedral complex. The cycles need not use the same tropical addition

Parameters:

Cycle A

Cycle B

Returns:

PolyhedralComplex

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shift_cycle(Cycle<Addition> C, Vector<Rational> T)

Computes the shift of a tropical cycle by a given vector

Parameters:

Cycle<Addition> C: a tropical cycle

Vector<Rational> T: The translate. Optional and zero vector by default. Should be given in tropical projective coordinates (but without leading coordinate for vertices or rays).

Returns:

Cycle<Addition>

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skeleton_complex(Cycle<Addition> C, Int k, Bool preserveRays)

Takes a polyhedral complex and computes the k-skeleton. Will return an empty cycle, if k is larger then the dimension of the given complex or smaller than 0.

Parameters:

Cycle<Addition> C: A polyhedral complex.

Int k: The dimension of the skeleton that should be computed

Bool preserveRays: When true, the function assumes that all rays of the fan remain in the k-skeleton, so it just copies the VERTICES, instead of computing an irredundant list. By default, this property is false.

Returns:

Cycle<Addition>

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triangulate_cycle(Cycle<Addition> F)

Takes a cycle and computes a triangulation

Parameters:

Cycle<Addition> F: A cycle (not necessarily weighted)

Returns:

Cycle<Addition>

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---

These functions deal with the conversion of tropical objects between Min and Max.

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dual_addition_version(Polytope<Addition,Scalar> polytope, Bool strong_conversion)

This function takes a tropical polytope and returns a tropical polytope that uses the opposite tropical addition. By default, the signs of the POINTS are inverted.

Parameters:

Polytope<Addition,Scalar> polytope

Bool strong_conversion: This is optional and TRUE by default. It indicates, whether the signs of the vertices should be inverted.

Returns:

Polytope

dual_addition_version(TropicalNumber<Addition,Scalar> number, Bool strong_conversion)

This function takes a tropical number and returns a tropical number that uses the opposite tropical addition. By default, the sign is inverted.

Parameters:

TropicalNumber<Addition,Scalar> number

Bool strong_conversion: This is optional and TRUE by default. It indicates, whether the sign of the number should be inverted.

Returns:

TropicalNumber

dual_addition_version(Vector<TropicalNumber<Addition,Scalar>> vector, Bool strong_conversion)

This function takes a vector of tropical numbers and returns a vector that uses the opposite tropical addition. By default, the signs of the entries are inverted.

Parameters:

Vector<TropicalNumber<Addition,Scalar>> vector

Bool strong_conversion: This is optional and TRUE by default. It indicates, whether the signs of the entries should be inverted.

Returns:

Vector<TropicalNumber>

dual_addition_version(Matrix<TropicalNumber<Addition,Scalar>> matrix, Bool strong_conversion)

This function takes a matrix of tropical numbers and returns a matrix that uses the opposite tropical addition. By default, the signs of the entries are inverted.

Parameters:

Matrix<TropicalNumber<Addition,Scalar>> matrix

Bool strong_conversion: This is optional and TRUE by default. It indicates, whether the signs of the entries should be inverted.

Returns:

Matrix<TropicalNumber>

dual_addition_version(Polynomial<TropicalNumber<Addition,Scalar>> polynomial, Bool strong_conversion)

This function takes a tropical polynomial and returns a tropical polynomial that uses the opposite tropical addition. By default, the signs of the coefficients are inverted.

Parameters:

Polynomial<TropicalNumber<Addition,Scalar>> polynomial

Bool strong_conversion: This is optional and TRUE by default. It indicates, whether the signs of the coefficients should be inverted.

Returns:

Polynomial<TropicalNumber>

dual_addition_version(Cycle<Addition> cycle, Bool strong_conversion)

This function takes a tropical cycle and returns a tropical cycle that uses the opposite tropical addition. By default, the signs of the vertices are inverted.

Parameters:

Cycle<Addition> cycle

Bool strong_conversion: This is optional and TRUE by default. It indicates, whether the signs of the vertices should be inverted.

Returns:

Cycle

Example:

This first creates the standard tropical min-line with apex (0:1:1) in the 3-torus, and then computes from it the corresponding max-cycle - in this case the standard max-line with apex (0:-1:-1), and assigns it to the variable $new_cycle.

 > $cycle = new Hypersurface<Min>(POLYNOMIAL=>toTropicalPolynomial("min(a,b-1,c-1)"));
 > $new_cycle = dual_addition_version($cycle);

dual_addition_version(MatroidRingCycle<Addition> M)

Takes a MatroidRingCycle and converts it to the dual tropical addition

Parameters:

MatroidRingCycle<Addition> M

Returns:

MatroidRingCycle

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These functions create specific morphisms and functions.

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projection_map<Addition>(Int n, Set<Int> s)

This creates a linear projection from the projective torus of dimension n to a given set of coordinates.

Type Parameters:

Addition: Min or Max

Parameters:

Int n: The dimension of the projective torus which is the domain of the projection.

Set<Int> s: The set of coordinaes to which the map should project. Should be a subset of (0,..,n)

Returns:

Morphism<Addition>

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projection_map(Int n, Int m)

This computes the projection from a projective torus of given dimension to a projective torus of lower dimension which lives on the first coordinates

Parameters:

Int n: The dimension of the larger torus

Int m: The dimension of the smaller torus

Returns:

Morphism

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These functions are special +++ for creating special tropical cycles.

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affine_linear_space<Addition>(Matrix<Rational> lineality, Vector<Rational> translate, Integer weight)

This creates a true affine linear space.

Type Parameters:

Addition: Min or Max

Parameters:

Matrix<Rational> lineality: (Row) generators of the lineality space, in tropical homogeneous coordinates, but without the leading zero

Vector<Rational> translate: Optional. The vertex of the space. By default this is the origin

Integer weight: Optional. The weight of the space. By default, this is 1.

Returns:

Cycle<Addition>

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cross_variety<Addition>(Int n, Int k, Rational h, Integer weight)

This creates the k-skeleton of the tropical variety dual to the cross polytope

Type Parameters:

Addition: Min or Max

Parameters:

Int n: The (projective) ambient dimension

Int k: The (projective) dimension of the variety.

Rational h: Optional, 1 by default. It is a nonnegative number, describing the height of the one interior lattice point of the cross polytope.

Integer weight: Optional, 1 by default. The (global) weight of the variety

Returns:

Cycle<Addition>

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empty_cycle<Addition>(Int ambient_dim)

Creates the empty cycle in a given ambient dimension (i.e. it will set the property PROJECTIVE_AMBIENT_DIM.

Type Parameters:

Addition: Max or Min

Parameters:

Int ambient_dim: The ambient dimension

Returns:

Cycle

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halfspace_subdivision<Addition>(Rational a, Vector<Rational> g, Integer w)

Creates a subdivision of the tropical projective torus along an affine hyperplane into two halfspaces. This hyperplane is defined by an equation gx = a

Type Parameters:

Addition: Max or Min

Parameters:

Rational a: The constant coefficient of the equation

Vector<Rational> g: The linear coefficients of the equation Note that the equation must be homogeneous in the sense that (1,..1) is in its kernel, i.e. all entries of g add up to 0.

Integer w: The (constant) weight this cycle should have

Returns:

Cycle

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matroid_ring_cycle<Addition>(Matroid M, Int scale)

This creates the cycle corresponding to a given matroid. It automatically computes its representation in the basis of nested matroids. This is equivalent to using the constructor of MatroidRingCycle.

Type Parameters:

Addition: The tropical addition. Either Min or Max.

Parameters:

Matroid M: A matroid

Int scale: An optional linear coefficient. The resulting cycle will be scale*B(M) in the ring of matroids.

Returns:

MatroidRingCycle<Addition>

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Example:

Computes the matroid ring cycle of the uniform matroid of rank 2 on 3 elements in two equivalent ways:

 > $r = matroid_ring_cycle<Max>(matroid::uniform_matroid(2,3));
 > $s = new MatroidRingCycle<Max>(matroid::uniform_matroid(2,3));

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orthant_subdivision<Addition>(Vector<Rational> point, Int chart, Integer weight)

Creates the orthant subdivision around a given point on a given chart, i.e. the corresponding affine chart of this cycle consists of all 2^n fulldimensional orthants

Type Parameters:

Addition: Min or Max

Parameters:

Vector<Rational> point: The vertex of the subdivision. Should be given in tropical homogeneous coordinates with leading coordinate.

Int chart: On which chart the cones should be orthants, 0 by default.

Integer weight: The constant weight of the cycle, 1 by default.

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point_collection<Addition>(Matrix<Rational> points, Vector<Integer> weights)

Creates a cycle consisting of a collection of points with given weights

Type Parameters:

Addition: Max or Min

Parameters:

Matrix<Rational> points: The points, in tropical homogeneous coordinates (though not with leading ones for vertices).

Vector<Integer> weights: The list of weights for the points

Returns:

Cycle

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projective_torus<Addition>(Int n, Integer w)

Creates the tropical projective torus of a given dimension. In less fancy words, the cycle is the complete complex of given (tropical projective) dimension n, i.e. Rⁿ

Type Parameters:

Addition: Max or Min.

Parameters:

Int n: The tropical projective dimension.

Integer w: The weight of the cycle. Optional and 1 by default.

Returns:

Cycle

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uniform_linear_space<Addition>(Int n, Int k, Integer weight)

Creates the linear space of the uniform matroid of rank k+1 on n+1 variables.

Type Parameters:

Addition: A The tropical addition (min or max)

Parameters:

Int n: The ambient (projective) dimension.

Int k: The (projective dimension of the fan.

Integer weight: The global weight of the cycle. 1 by default.

Returns:

Cycle

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These functions test cycles for degeneracy, i.e. whether a cycle is the empty cycle

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is_empty

This tests whether a cycle is the empty cycle.

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These functions deal with the computation of divisors

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divisor(Cycle C, TropicalRationalFunction F)

This function computes the divisor of one or more rational functions on a tropical cycle.

Parameters:

Cycle C: A tropical cycle

TropicalRationalFunction F: An arbitrary list of rational functions (r_1,…r_n). The DOMAIN of r_i should contain the support of r_{i-1} * … * r_1 * C. Note that using the ^-operator on these rational functions is allowed and will result in applying the corresponding function several times.

Returns:

Cycle

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divisor_nr(Cycle C, TropicalRationalFunction F)

This function computes the divisor of one or more rational functions on a tropical cycle. It should only be called, if the DOMAIN of all occurring cycles is the cycle itself. This function will be faster than divisor, since it computes no refinements.

Parameters:

Cycle C: A tropical cycle

TropicalRationalFunction F: An arbitrary list of rational functions (r_1,…r_n). The DOMAIN of each function should be equal (in terms of VERTICES and MAXIMAL_POLYTOPES) to the cycle. Note that using the ^-operator on these rational functions is allowed and will result in applying the corresponding function several times.

Returns:

Cycle

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piecewise_divisor(Cycle<Addition> F, IncidenceMatrix cones, Vector<Integer> coefficients)

Computes a divisor of a linear sum of certain piecewise polynomials on a simplicial fan.

Parameters:

Cycle<Addition> F: A simplicial fan without lineality space in non-homogeneous coordinates

IncidenceMatrix cones: A list of cones of F (not maximal, but all of the same dimension). Each cone t corresponds to a piecewise polynomial psi_t, defined by subsequently applying the rational functions that are 1 one exactly one ray of t and 0 elsewhere. Note that cones should refer to indices in SEPARATED_VERTICES, which may have a different order

Vector<Integer> coefficients: A list of coefficients a_t corresponding to the cones.

Returns:

Cycle<Addition>

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These functions deal with the creation and study of tropical Hurwitz cycles.

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hurwitz_cycle<Addition>(Int k, Vector<Int> degree, Vector<Rational> points)

This function computes the Hurwitz cycle H_k(x), x = (x_1,…,x_n)

Type Parameters:

Addition: Min or Max, where the coordinates live.

Parameters:

Int k: The dimension of the Hurwitz cycle, i.e. the number of moving vertices

Vector<Int> degree: The degree x. Should add up to 0

Vector<Rational> points: Optional. Should have length n-3-k. Gives the images of the fixed vertices (besides 0). If not given all fixed vertices are mapped to 0 and the function computes the recession fan of H_k(x)

Options:

Bool Verbose: If true, the function outputs some progress information. True by default.

Returns:

Cycle<Addition>

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hurwitz_marked_cycle<Addition>(Int k, Vector<Int> degree, Vector<Rational> pullback_points)

Computes the marked k-dimensional tropical Hurwitz cycle H_k(degree)

Type Parameters:

Addition: Min or Max

Parameters:

Int k: The dimension of the Hurwitz cycle

Vector<Int> degree: The degree of the covering. The sum over all entries should be 0 and if n := degree.dim, then 0 ⇐ k ⇐ n-3

Vector<Rational> pullback_points: The points p_i that should be pulled back to determine the Hurwitz cycle (in addition to 0). Should have length n-3-k. If it is not given, all p_i are by default equal to 0 (same for missing points)

Returns:

Cycle<Addition>

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hurwitz_pair<Addition>(Int k, Vector<Int> degree, Vector<Rational> points)

This function computes hurwitz_subdivision and hurwitz_cycle at the same time, returning the result in an array

Type Parameters:

Addition: Min or Max, where the coordinates live.

Parameters:

Int k: The dimension of the Hurwitz cycle, i.e. the number of moving vertices

Vector<Int> degree: The degree x. Should add up to 0

Vector<Rational> points: Optional. Should have length n-3-k. Gives the images of the fixed vertices (besides 0). If not given all fixed vertices are mapped to 0 and the function computes the subdivision of M_0,n containing the recession fan of H_k(x)

Options:

Bool Verbose: If true, the function outputs some progress information. True by default.

Returns:

List

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hurwitz_pair_local<Addition>(Int k, Vector<Int> degree, RationalCurve local_curve)

Does the same as hurwitz_pair, except that no points are given and the user can give a RationalCurve object representing a ray. If given, the computation will be performed locally around the ray.

Type Parameters:

Addition: Min or Max, where the coordinates live.

Parameters:

Int k

Vector<Int> degree

RationalCurve local_curve

Options:

Bool Verbose: If true, the function outputs some progress information. True by default.

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hurwitz_subdivision<Addition>(Int k, Vector<Int> degree, Vector<Rational> points)

This function computes a subdivision of M_0,n containing the Hurwitz cycle H_k(x), x = (x_1,…,x_n) as a subfan. If k = n-4, this subdivision is the unique coarsest subdivision fulfilling this property

Type Parameters:

Addition: Min or Max, where the coordinates live.

Parameters:

Int k: The dimension of the Hurwitz cycle, i.e. the number of moving vertices

Vector<Int> degree: The degree x. Should add up to 0

Vector<Rational> points: Optional. Should have length n-3-k. Gives the images of the fixed vertices (besides the first one, which always goes to 0) as elements of R. If not given, all fixed vertices are mapped to 0 and the function computes the subdivision of M_0,n containing the recession fan of H_k(x)

Options:

Bool Verbose: If true, the function outputs some progress information. True by default.

Returns:

Cycle

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These are general functions related to intersection theory.

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degree(Cycle A)

Computes the degree of a tropical variety as the total weight of the 0-dimensional intersection product obtained by intersecting with the complementary uniform linear space.

Parameters:

Cycle A: tropical cycle

Returns:

Integer

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intersect(Cycle X, Cycle Y)

Computes the intersection product of two tropical cycles in the projective torus Use intersect_check_transversality to check for transversal intersections

Parameters:

Cycle X: A tropical cycle

Cycle Y: A tropical cycle, living in the same ambient space as X

Returns:

Cycle

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intersect_check_transversality(Cycle X, Cycle Y, Bool ensure_transversality)

Computes the intersection product of two tropical cycles in R^n and tests whether the intersection is transversal (in the sense that the cycles intersect set-theoretically in the right dimension).

Parameters:

Cycle X: A tropical cycle

Cycle Y: A tropical cycle, living in the same space as X

Bool ensure_transversality: Whether non-transversal intersections should not be computed. Optional and false by default. If true, returns the zero cycle if it detects a non-transversal intersection

Returns:

List

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intersect_in_smooth_surface(Cycle<Addition> surface, Cycle<Addition> A, Cycle<Addition> B)

Computes the intersection product of two cycles in a smooth surface

Parameters:

Cycle<Addition> surface: A smooth surface

Cycle<Addition> A: any cycle in the surface

Cycle<Addition> B: any cycle in the surface

Returns:

Cycle<Addition>

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point_functions<Addition>(Vector<Rational> A)

Constructs a list of rational functions that cut out a single point in the projective torus

Type Parameters:

Addition: Min or Max. Determines the type of the rational functions.

Parameters:

Vector<Rational> A: point in the projective torus, given in tropical homogeneous coordinates, but without leading coordinate.

Returns:

TropicalRationalFunction

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pullback(Morphism m, TropicalRationalFunction r)

This computes the pullback of a rational function via a morphism Due to the implementation of composition of maps, the DOMAIN of the rational function need not be contained in the image of the morphism The pullback will be defined in the preimage of the domain.

Parameters:

Morphism m: A morphism.

TropicalRationalFunction r: A rational function.

Returns:

TropicalRationalFunction

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These functions deal with finding rational functions to given divisors.

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cutting_functions(Cycle<Addition> F, Vector<Integer> weight_aim)

Takes a weighted complex and a list of desired weights on its codimension one faces and computes all possible rational functions on (this subdivision of ) the complex

Parameters:

Cycle<Addition> F: A tropical variety, assumed to be simplicial.

Vector<Integer> weight_aim: A list of weights, whose length should be equal to the number of CODIMENSION_ONE_POLYTOPES. Gives the desired weight on each codimension one face

Returns:

Matrix<Rational>

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simplicial_diagonal_system(Cycle<Addition> fan)

This function computes the inhomogeneous version of simplicial_piecewise_system in the sense that it computes the result of the above mentioned function (i.e. which coefficients for the piecewise polynomials yield the zero divisor) and adds another column at the end where only the entries corresponding to the diagonal cones are 1, the rest is zero. This can be seen as asking for a solution to the system that cuts out the diagonal (all solutions whose last entry is 1)

Parameters:

Cycle<Addition> fan: . A simplicial fan without lineality space.

Returns:

Matrix<Rational>

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simplicial_piecewise_system(Cycle<Addition> F)

This function takes a d-dimensional simplicial fan F and computes the linear system defined in the following way: For each d-dimensional cone t in the diagonal subdivision of FxF, let psi_t be the piecewise polynomial defined by subsequently applying the rational functions that are 1 one exactly one ray of t and 0 elsewhere. Now for which coefficients a_t is sum_t a_t psi_t * (FxF) = 0?

Parameters:

Cycle<Addition> F: A simplicial fan without lineality space

Returns:

Matrix<Rational>

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simplicial_with_diagonal(Cycle<Addition> F)

This function takes a simplicial fan F (without lineality space) and computes the coarsest subdivision of F x F containing all diagonal rays (r,r)

Parameters:

Cycle<Addition> F: A simplicial fan without lineality space.

Returns:

Cycle<Addition>

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These functions deal with lattices (meaning free abelian, finitely generated groups).

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lattice_index(Matrix<Integer> m)

This computes the index of a lattice in its saturation.

Parameters:

Matrix<Integer> m: A list of (row) generators of the lattice.

Returns:

Integer

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randomInteger(Int max_arg, Int n)

Returns n random integers in the range 0.. (max_arg-1),inclusive Note that this algorithm is not optimal for real randomness: If you change the range parameter and then change it back, you will usually get the exact same sequence as the first time

Parameters:

Int max_arg: The upper bound for the random integers

Int n: The number of integers to be created

Returns:

Vector<Integer>

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These functions deal with the computation and representation of (families of) lines in surfaces.

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lines_in_cubic(Polynomial<TropicalNumber<Addition>> p)

This takes either:

1. A homogeneous polynomial of degree 3 in 4 variables or
2. A polynomial of degree 3 in 3 variables

and computes the corresponding cubic and finds all tropical lines and families thereof in the cubic. The result is returned as a LinesInCubic object. Note that the function has some heuristics for recognizing families, but might still return a single family as split up into two.

Parameters:

Polynomial<TropicalNumber<Addition>> p: A homogeneous tropical polynomial of degree 3 in four variables.

Returns:

LinesInCubic<Addition>

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These functions are used for doing computations locally around a specified part of a Cycle, given via a nontrivial LOCAL_RESTRICTION.

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local_codim_one(Cycle<Addition> complex, Int face)

This takes a weighted complex and an index of one of its codimension one faces (The index is in CODIMENSION_ONE_POLYTOPES) and computes the complex locally restricted to that face

Parameters:

Cycle<Addition> complex: An arbitrary weighted complex

Int face: An index of a face in CODIMENSION_ONE_POLYTOPES

Returns:

Cycle<Addition>

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local_point(Cycle<Addition> complex, Vector<Rational> v)

This takes a weighted complex and an arbitrary vertex in homogeneous coordinates (including the leading coordinate) that is supposed to lie in the support of the complex. It then refines the complex such that the vertex is a cell in the polyhedral structure and returns the complex localized at this vertex

Parameters:

Cycle<Addition> complex: An arbitrary weighted complex

Vector<Rational> v: A vertex in homogeneous coordinates and with leading coordinate. It should lie in the support of the complex (otherwise an error is thrown)

Returns:

Cycle<Addition>

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local_restrict(Cycle<Addition> complex, IncidenceMatrix cones)

This takes a tropical variety and an IncidenceMatrix describing a set of cones (not necessarily maximal ones) of this variety. It will then create a variety that contains all compatible maximal cones and is locally restricted to the given cone set.

Parameters:

Cycle<Addition> complex: An arbitrary weighted complex

IncidenceMatrix cones: A set of cones, indices refer to VERTICES

Returns:

Cycle<Addition>

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local_vertex(Cycle<Addition> complex, Int ray)

This takes a weighted complex and an index of one of its vertices (the index is to be understood in VERTICES) It then localizes the variety at this vertex. The index should never correspond to a far vertex in a complex, since this would not be a cone

Parameters:

Cycle<Addition> complex: An arbitrary weighted complex

Int ray: The index of a ray/vertex in RAYS

Returns:

Cycle<Addition>

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star_at_point(Cycle<Addition> C, Vector<Rational> v)

Computes the Star of a tropical cycle at an arbitrary point in its support

Parameters:

Cycle<Addition> C: a tropical cycle

Vector<Rational> v: A point, given in tropical projective coordinates with leading coordinate and which should lie in the support of C

Returns:

Cycle<Addition>

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star_at_vertex(Cycle<Addition> C, Int i)

Computes the Star of a tropical cycle at one of its vertices.

Parameters:

Cycle<Addition> C: a tropical cycle

Int i: The index of a vertex in VERTICES, which should not be a ray

Returns:

Cycle<Addition>

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These functions deal with the arithmetics of MatroidRingCycle objects.

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matroid_ring_linear_space(MatroidRingCycle L)

Given a list of MatroidRingCycle objects (of the same rank r, on the same ground set), computes a matrix that represents the linear space spanned by these cycles in the rank r graded part of the matroid ring. Rows correspond to the cycles, columns correspond to the set of all the nested matroid occurring in all basis presentations of the cycles. Entries are linear coefficients.

Parameters:

MatroidRingCycle L: A list of matroid ring cycles.

Returns:

Matrix<Rational>

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Example:

The following computes 4 cycles of matroids of rank 2 on 4 elements. It then computes the corresponding linear space representation, which shows immediately that M1 + M2 = M3 + M4

 > $m1 = new matroid::Matroid(N_ELEMENTS=>4,BASES=>[[0,1],[0,2],[1,3],[2,3]]);
 > $m2 = matroid::uniform_matroid(2,4);
 > $m3 = new matroid::Matroid(N_ELEMENTS=>4,BASES=>[[0,1],[0,2],[0,3],[1,3],[2,3]]);
 > $m4 = new matroid::Matroid(N_ELEMENTS=>4,BASES=>[[0,1],[0,2],[1,2],[1,3],[2,3]]);
 > @r = map { matroid_ring_cycle<Min>($_)} ($m1,$m2,$m3,$m4);
 > print matroid_ring_linear_space(@r);
 1 1 -1
 0 0 1 
 0 1 0
 1 0 0

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matroid_ring_product(MatroidRingCycle A, MatroidRingCycle B)

Computes the product of two matroid ring cycles.

Parameters:

MatroidRingCycle A

MatroidRingCycle B

Returns:

MatroidRingCycle

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matroid_ring_sum(MatroidRingCycle A, MatroidRingCycle B)

Computes the sum of two matroid ring cycles

Parameters:

MatroidRingCycle A

MatroidRingCycle B

Returns:

MatroidRingCycle

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zero_in_matroid_ring<Addition>(Int n)

Constructs the zero element of the matroid ring.

Type Parameters:

Addition: The tropical Addition, either Min or Max.

Parameters:

Int n: The size of the ground set.

Returns:

MatroidRingCycle

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Example:

Computes the zero element of the matroid ring on 17 elements.

 > $z = zero_in_matroid_ring<Max>(17);
 > print $z->RANK;
 0

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These functions deal with matroids and matroidal fans.

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augmented_matroid_fan<Addition>(Matroid A)

Computes the augmented Bergman fan of a matroid. Note that this is potentially very slow for large matroids. A definition of the augmented Bergman fan can be found in arXiv:2002.03341. See also the follow up paper arXiv:2010.06088. The algorithim used to construct the augemented Bergman fan closely follows its description in the first paper.

Type Parameters:

Addition: Min or max, determines the matroid fan coordinates.

Parameters:

Matroid A: matroid. Should be loopfree.

Returns:

Cycle<Addition>

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Example:

 > $m = matroid::fano_matroid;
 > $f = tropical::augmented_matroid_fan<Min>($m);

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is_smooth(Cycle<Addition> a)

Takes a weighted fan and returns if it is smooth (i.e. isomorphic to a Bergman fan B(M)/L for some matroid M) or not. The algorithm works for fans of dimension 0,1,2 and codimension 0,1! For other dimensions the algorithm could give an answer but it is not guaranteed.

Parameters:

Cycle<Addition> a: tropical fan F

Returns:

List

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matroid_fan<Addition>(Matroid m)

Uses an algorithm by Felipe Rincón to compute the matroidal fan of a given matroid. If you have a matrix at hand that represents this matroid, it is recommended to call this function with that matrix as an argument - it is significantly faster.

Type Parameters:

Addition: Min or Max - determines the coordinates.

Parameters:

Matroid m: A matroid

Returns:

Cycle

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matroid_fan<Addition>(Matrix<Rational> m)

Uses an algorithm by Felipe Rincón to compute the bergman fan of the column matroid of the given matrix. Calling the function in this manner is significantly faster than calling it on the matroid.

Type Parameters:

Addition: Min or Max - determines the coordinates.

Parameters:

Matrix<Rational> m: A matrix, whose column matroid is considered.

Returns:

Cycle

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matroid_fan_from_flats<Addition>(Matroid A)

Computes the fan of a matroid in its chains-of-flats subdivision. Note that this is potentially very slow for large matroids.

Type Parameters:

Addition: Min or max, determines the matroid fan coordinates.

Parameters:

Matroid A: matroid. Should be loopfree.

Returns:

Cycle<Addition>

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matroid_from_fan(Cycle<Addition> A)

Takes the bergman fan of a matroid and reconstructs the corresponding matroid The fan has to be given in its actual matroid coordinates, not as an isomorphic transform. The actual subdivision is not relevant.

Parameters:

Cycle<Addition> A: tropical cycle, the Bergman fan of a matroid

Returns:

Matroid

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These functions deal with moduli spaces of abstract or parametrized rational curves.

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count_mn_cones(Int n, Int k)

Computes the number of k-dimensional cones of the tropical moduli space M_0,n

Parameters:

Int n: The number of leaves. Should be >= 3

Int k: The number of bounded edges. This argument is optional and n-3 by default

Returns:

Integer

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count_mn_rays(Int n)

Computes the number of rays of the tropical moduli space M_0,n

Parameters:

Int n: The number of leaves. Should be >= 3

Returns:

Integer

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evaluation_map<Addition>(Int n, Matrix<Rational> Delta, Int i)

This creates the i-th evaluation function on $ M_{0,n}^{(lab)}(R^r,Delta) $ (which is actually realized as $ M_{0,(n+|Delta|)} \times R^r $ ) and can be created via space_of_stable_maps).

Type Parameters:

Addition: Min or Max

Parameters:

Int n: The number of marked (contracted) points

Matrix<Rational> Delta: The directions of the unbounded edges (given as row vectors in tropical projective coordinates without leading coordinate, i.e. have r+1 columns)

Int i: The index of the marked point that should be evaluated. Should lie in between 1 and n Note that the i-th marked point is realized as the $ (|Delta|+i) $-th leaf in $ M_{0,n+|Delta|} $ and that the $ R^r $ - coordinate is interpreted as the position of the n-th leaf. In particular, ev_n is just the projection to the R^r-coordinates

Returns:

Morphism<Addition>

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evaluation_map<Addition>(Int n, Int r, Int d, Int i)

This creates the i-th evaluation function on $ M_{0,n}^{(lab)}(R^r,d) $ (which is actually realized as $ M_{0,n+d(r+1)} \times R^r $ ) This is the same as calling the function evaluation_map(Int,Int,Matrix<Rational>,Int) with the standard d-fold degree as matrix (i.e. each (inverted) unit vector of $ R^{r+1} $ occurring d times).

Type Parameters:

Addition: Min or Max

Parameters:

Int n: The number of marked (contracted) points

Int r: The dimension of the target space

Int d: The degree of the embedding. The direction matrix will be the standard d-fold directions, i.e. each unit vector (inverted for Max), occurring d times.

Int i: The index of the marked point that should be evaluated. i should lie in between 1 and n

Returns:

Morphism<Addition>

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forgetful_map<Addition>(Int n, Set<Int> S)

This computes the forgetful map from the moduli space $ M_{0,n} $ to $ M_{0,n-|S|} $

Type Parameters:

Addition: Min or Max

Parameters:

Int n: The number of leaves in the moduli space $ M_{0,n} $

Set<Int> S: The set of leaves to be forgotten. Should be a subset of (1,..,n)

Returns:

Morphism

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local_m0n<Addition>(RationalCurve R …)

Computes the moduli space M_0,n locally around a given list of combinatorial types. More precisely: It computes the weighted complex consisting of all maximal cones containing any of the given combinatorial types and localizes at these types This should only be used for curves of small codimension. What the function actually does, is that it combinatorially computes the cartesian products of M_0,v's, where v runs over the possible valences of vertices in the curves For max(v) ⇐ 8 this should terminate in a reasonable time (depending on the number of curves) The coordinates are the same that would be produced by the function m0n

Type Parameters:

Addition: Min or Max, determines the coordinates

Parameters:

RationalCurve R …: A list of rational curves (preferably in the same M_0,n)

Returns:

Cycle<Addition>

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m0n<Addition>(Int n)

Creates the moduli space of abstract rational n-marked curves. Its coordinates are given as the coordinates of the bergman fan of the matroid of the complete graph on n-1 nodes (but not computed as such) The isomorphism to the space of curve metrics is obtained by choosing the last leaf as special leaf

Type Parameters:

Addition: Min or Max

Parameters:

Int n: The number of leaves. Should be at least 3

Returns:

Cycle

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psi_class<Addition>(Int n, Int i)

Computes the i-th psi class in the moduli space of n-marked rational tropical curves M_0,n

Type Parameters:

Addition: Min or Max

Parameters:

Int n: The number of leaves in M_0,n

Int i: The leaf for which we want to compute the psi class ( in 1,..,n )

Returns:

Cycle

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psi_product<Addition>(Int n, Vector<Int> exponents)

Computes a product of psi classes psi_1^k_1 * … * psi_n^k_n on the moduli space of rational n-marked tropical curves M_0,n

Type Parameters:

Addition: Min or Max

Parameters:

Int n: The number of leaves in M_0,n

Vector<Int> exponents: The exponents of the psi classes k_1,..,k_n. If the vector does not have length n or if some entries are negative, an error is thrown

Returns:

Cycle

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space_of_stable_maps<Addition>(Int n, Int d, Int r)

Creates the moduli space of stable maps of rational n-marked curves into a projective torus. It is given as the cartesian product of M_{0,n+d} and R^r, where n is the number of contracted leaves, d the number of non-contracted leaves and r is the dimension of the target torus. The R^r - coordinate is interpreted as the image of the last (n-th) contracted leaf. Due to the implementation of cartesian_product, the projective coordinates are non-canonical: Both M_{0,n+d} and R^r are dehomogenized after the first coordinate, then the product is taken and homogenized after the first coordinate again. Note that functions in a-tint will usually treat this space in such a way that the first d leaves are the non-contracted ones and the remaining n leaves are the contracted ones.

Type Parameters:

Addition: Min or Max. Determines the coordinates.

Parameters:

Int n: The number of contracted leaves

Int d: The number of non-contracted leaves

Int r: The dimension of the target space for the stable maps.

Returns:

Cycle

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These are general functions that deal with morphisms and their arithmetic.

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add_morphisms(Morphism f, Morphism g)

Computes the sum of two morphisms. Both DOMAINs should have the same support and the target spaces should have the same ambient dimension The domain of the result will be the common refinement of the two domains.

Parameters:

Morphism f

Morphism g

Returns:

Morphism

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These functions deal with applications of tropical geometry to phylogenetics.

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fw_set(Matrix V)

Computes the asymmetric tropical Fermat-Weber set. See A. Comăneci, M. Joswig: Tropical medians by transportation, arXiv:2205.00036

Parameters:

Matrix V: whose rows represent points in the tropical projective torus

Returns:

Polytope

Example:

Computes the Fermat-Weber set of three points and prints its ordinary vertices.

 > $V = new Matrix([[2,-1,-1],[-1,2,-1],[-1,-1,2]]);
 > $FW = tropical::fw_set($V);
 > print $FW -> VERTICES;
 1 0 3 0
 1 3 3 0
 1 3 0 0
 1 0 -3 0
 1 -3 -3 0
 1 -3 0 0

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tropical_median(Matrix V)

Returns the tropical median–the average of the tropical vertices of the asymmetric tropical Fermat-Weber set. See A. Comăneci, M. Joswig: Tropical medians by transportation, arXiv:2205.00036

Parameters:

Matrix V: whose rows represent points in the tropical projective torus

Returns:

Vector

Example:

Computes the tropical median of five points.

 > $V = new Matrix([[14,-7,-7],[13,-14,1],[11,-13,2],[10,1,-11],[3,-3,0]]);
 > print tropical_median($V);
 9 -6 -3

---

tropical_median_consensus()

Computes the tropical median consensus of given phylogenetic trees. They must have the same taxa. It accepts only equidistant trees (see Section 7.2 from [C. Semple, M. Steel: Phylogenetics]). The method is described in A. Comăneci, M. Joswig: Tropical medians by transportation, arXiv:2205.00036

Returns:

PhylogeneticTree

Example:

The tropical median consensus of three phylogenetic trees.

 > $T1 = new graph::PhylogeneticTree(NEWICK => "(H:30,(C:10,B:10):20):10,G:40;");
 > $T2 = new graph::PhylogeneticTree(NEWICK => "((H:10,C:10):20,B:30):10,G:40;");
 > $T3 = new graph::PhylogeneticTree(NEWICK => "(H:25,C:25):15,(B:15,G:15):25;");
 > $Tc = tropical_median_consensus($T1, $T2, $T3);
 > print $Tc -> NEWICK;
 G:40,(B:35,(C:30,H:30):5):5;

---

These functions produce a tropical hypersurface from other objects.

---

hyperplane<Addition>(Vector<TropicalNumber<Addition>> coeffs)

Create a tropical hyperplane as object of type Hypersurface.

Type Parameters:

Addition: Min or Max

Parameters:

Vector<TropicalNumber<Addition>> coeffs: coefficients of the tropical linear form (can also be specified as anonymous array).

Returns:

Hypersurface<Addition>

---

points2hypersurface(Matrix<TropicalNumber<Addition>> points)

Constructs a tropical hypersurface defined by the linear hyperplanes associated to the given points. Min-tropical points give rise to Max-tropical linear forms, and vice versa, and this method produces the hypersurface associated to the (tropical) product of these linear forms, that is, the union of the respective associated hyperplanes.

Parameters:

Matrix<TropicalNumber<Addition>> points

Returns:

Hypersurface

Example:

This produces the union of two (generic) Max-hyperplanes, and assigns it to $H.

 > $points = new Matrix<TropicalNumber<Min>>([[0,1,0],[0,0,1]]);
 > $H = points2hypersurface($points);

---

These functions produce an object of type Polytope from other objects.

---

cyclic<Addition>(Int d, Int n)

Produces a tropical cyclic d-polytope with n vertices. Cf.

> Josephine Yu & Florian Block, arXiv: math.MG/0503279.

Type Parameters:

Addition: Min or Max.

Parameters:

Int d: the dimension

Int n: the number of generators

Returns:

Polytope<Addition>

Example:

 > $c = cyclic<Min>(3,4);
 > print $c->VERTICES;
 0 0 0 0
 0 1 2 3
 0 2 4 6
 0 3 6 9

---

hypersimplex<Addition>(Int d, Int k)

Produce the tropical hypersimplex Δ(k,d). Cf.

> M. Joswig math/0312068v3, Ex. 2.10.

.. The value of //k// defaults to 1, yielding a tropical standard simplex.
  ? Type Parameters:
  :: ''Addition'': Max or Min
  ? Parameters:
  :: ''[[.:common#Int |Int]]'' ''d'': the dimension
  :: ''[[.:common#Int |Int]]'' ''k'': the number of +/-1 entries
  ? Returns:
  :''[[.:tropical:Polytope |Polytope]]<Addition>''
  ? Example:
  :: <code perl> > $h = hypersimplex<Min>(2,1);

> print $h→VERTICES; 0 1 1 0 -1 0 0 0 -1 </code>

---

matroid_polytope<Addition, Scalar>(Matroid m, Scalar v)

Produce the tropical matroid polytope from a matroid m. Each vertex corresponds to a basis of the matroid, the non-bases coordinates get value 0, the bases coordinates get value v, default is -orientation.

Type Parameters:

Addition: Min or Max

Scalar: coordinate type

Parameters:

Matroid m

Scalar v: value for the bases

Returns:

Polytope<Addition,Scalar>

Example:

 > $m = new matroid::Matroid(VECTORS=>[[1,0,0],[1,0,1],[1,1,0],[1,0,2]]);
 > $P = matroid_polytope<Min>($m);
 > print $P->VERTICES;
 0 0 0 1
 0 1 0 0
 0 -1 -1 -1

---

minkowski_sum(TropicalNumber<Addition,Scalar> lambda, Polytope<Addition,Scalar> P, TropicalNumber<Addition,Scalar> mu, Polytope<Addition,Scalar> Q)

Produces the tropical polytope (lambda \( \otimes \) P) \( \oplus \) (mu \( \otimes \) Q), where \( \otimes \) and \( \oplus \) are tropical scalar multiplication and tropical addition, respectively.

Parameters:

TropicalNumber<Addition,Scalar> lambda

Polytope<Addition,Scalar> P

TropicalNumber<Addition,Scalar> mu

Polytope<Addition,Scalar> Q

Returns:

Polytope<Addition,Scalar>

Example:

Create two tropical polytopes as tropical convex hulls of the given POINTS, and assign their tropical minkowsky sum to the variable $s.

 > $p1 = new Polytope<Min>(POINTS=>[[0,2,0],[0,1,1],[0,0,2]]);
 > $p2 = new Polytope<Min>(POINTS=>[[0,-1,-1],[0,1,1],[0,0,-2]]);
 > $s = minkowski_sum(0, $p1, 0, $p2);

---

These functions capture information of the object that is concerned with the action of permutation groups.

---

auto_group_on_coordinates(IncidenceMatrix etv, Set<Int> marked_edges)

Parameters:

IncidenceMatrix etv

Set<Int> marked_edges

Options:

Int verbosity: default 0

Returns:

Array<Array<Int>>

---

contracted_edge_incidence_matrix(IncidenceMatrix etv, Set<Int> contracted_edges)

Parameters:

IncidenceMatrix etv

Set<Int> contracted_edges

Options:

Int verbosity: default 0

Returns:

Pair<IncidenceMatrix,Array<Int>>

---

isomorphic_curves(IncidenceMatrix etv, Array<Int> vertex_weights, Vector<Scalar> v, Vector<Scalar> w)

Parameters:

IncidenceMatrix etv

Array<Int> vertex_weights

Vector<Scalar> v: first edge lengths

Vector<Scalar> w: second edge lengths

Options:

Int verbosity: default 0

Returns:

Bool

isomorphic_curves(Curve<Scalar> G, Curve<Scalar> H)

Parameters:

Curve<Scalar> G

Curve<Scalar> H

Options:

Int verbosity: default 0

Returns:

Bool

---

moduli_cell_of_curve

---

moduli_space(Curve<Scalar> G1, Curve<Scalar> G2, Curve<Scalar> Gn)

Produces the stacky moduli space corresponding to the tropical curves G₁,G₂,…,G_n.

Parameters:

Curve<Scalar> G1: first tropical curve

Curve<Scalar> G2: second tropical curve

Curve<Scalar> Gn: last tropical curve

Options:

Int verbosity: 0 (default) .. 5

Returns:

SimplicialComplex

---

These functions deal with covectors of subdivision of tropical point configurations.

---

coarse_covectors(Matrix<TropicalNumber<Addition,Scalar>> points, Matrix<TropicalNumber<Addition,Scalar>> generators)

This computes the coarse covector of a list of points relative to a list of generators.

Parameters:

Matrix<TropicalNumber<Addition,Scalar>> points

Matrix<TropicalNumber<Addition,Scalar>> generators

Returns:

Matrix<Int>

Example:

 > $generators = new Matrix<TropicalNumber<Max>>([[0,1,0],[0,0,1],[0,"-inf",2]]);
 > $points = new Matrix<TropicalNumber<Max>>([[0,1,1]]);
 > print coarse_covectors($points, $generators);
 2 1 2

---

coarse_covectors_of_scalar_vertices(Matrix<Scalar> points, Matrix<TropicalNumber<Addition,Scalar>> generators)

Computes the coarse covectors of a list of scalar points, as described in covectors_of_scalar_vertices

Parameters:

Matrix<Scalar> points

Matrix<TropicalNumber<Addition,Scalar>> generators

Returns:

Matrix<Int>

Example:

 > $generators = new Matrix<TropicalNumber<Max>>([[0,1,0],[0,0,1],[0,"-inf",2]]);
 > $points = new Matrix([[1,0,1,1]]);
 > print coarse_covectors_of_scalar_vertices($points, $generators);
 2 1 2

---

covectors(Matrix<TropicalNumber<Addition,Scalar>> points, Matrix<TropicalNumber<Addition,Scalar>> generators)

This computes the (fine) covector of a list of points relative to a list of generators.

Parameters:

Matrix<TropicalNumber<Addition,Scalar>> points

Matrix<TropicalNumber<Addition,Scalar>> generators

Returns:

Array<IncidenceMatrix>

Example:

 > $generators = new Matrix<TropicalNumber<Max>>([[0,1,0],[0,0,1],[0,"-inf",2]]);
 > $points = new Matrix<TropicalNumber<Max>>([[0,1,1]]);
 > print covectors($points, $generators);
 <{0 1}
 {0}
 {1 2}
 >

---

covectors_of_scalar_vertices(Matrix<Scalar> points, Matrix<TropicalNumber<Addition,Scalar>> generators)

This computes the (fine) covector of a list of points relative to a list of generators. The points are scalar points and they are supposed to be normalized in the following sense:

1. All bounded vertices have a leading 1
2. All unbounded vertices have a leading 0 and all nonzero entries are either +1 or -1.

(but not both) Furthermore, the points make up a polyhedral complex - in particular, every maximal cell has a bounded vertex. For the bounded vertices, covectors are computed as usual. For unbounded vertices, the nonzero entries are replaced by tropical zero, the complementary entries are copied from a bounded vertex sharing a cell and then the covector is computed.

Parameters:

Matrix<Scalar> points

Matrix<TropicalNumber<Addition,Scalar>> generators

Returns:

Array<IncidenceMatrix>

Example:

 > $generators = new Matrix<TropicalNumber<Max>>([[0,1,0],[0,0,1],[0,"-inf",2]]);
 > $points = new Matrix([[1,0,1,1]]);
 > print covectors_of_scalar_vertices($points, $generators);
 <{0 1}
 {0}
 {1 2}
 >

---

These functions deal with tropical linear spaces associated to valuated matroids.

---

linear_space(ValuatedMatroid<Addition,Rational> A)

This computes the tropical linear space (with the coarsest structure) associated to a valuated matroid. If you have a trivial valuation, it is highly recommended, you use matroid_fan instead.

Parameters:

ValuatedMatroid<Addition,Rational> A: valuated matroid, whose value group must be the rationals.

Returns:

Cycle<Addition>

---

These functions deal with general tropical arithmetic.

---

cramer(Matrix<TropicalNumber> matrix)

The solution vector of an unsigned tropical matrix equation. For more details and background see Akian, Gaubert & Guterman: Tropical Cramer determinants revisited. Tropical and idempotent mathematics and applications, Contemp. Math., 616, AMS, 2014

Parameters:

Matrix<TropicalNumber> matrix

Returns:

Vector<TropicalNumber>

Example:

 > print cramer(new Matrix<TropicalNumber<Min>>([[0,1,0],[0,4,1]]));
 2 0 1

---

intersection_extremals(Matrix<TropicalNumber> G, Vector<TropicalNumber> a, Vector<TropicalNumber> b)

This computes the extremal generators of a tropical cone given by generators G intersected with one inequality ax ~ bx. Here, ~ is ⇐ for min and >= for max.

Parameters:

Matrix<TropicalNumber> G

Vector<TropicalNumber> a

Vector<TropicalNumber> b

Returns:

Matrix<TropicalNumber>

Example:

 > $G = new Matrix<TropicalNumber<Min>>([[0,0,2],[0,4,0],[0,3,1]]);
 > $a = new Vector<TropicalNumber<Min>>(['inf','inf',-2]);
 > $b = new Vector<TropicalNumber<Min>>([0,-1,'inf']);
 > print intersection_extremals($G,$a,$b);
 0 0 1
 0 4 0
 0 3 1

---

is_contained(Matrix<TropicalNumber> apices, Array<Set<Int>> sectors)

Check if a point is contained in all tropical halfspaces given by their apices and the infeasible sectors

Parameters:

Matrix<TropicalNumber> apices

Array<Set<Int>> sectors

Returns:

Bool

---

matrixPair2apexSet(Matrix<TropicalNumber> G, Matrix<TropicalNumber> A)

Reformulate the description of an inequality system given by two matrices to the description by apices and infeasible sectors

Parameters:

Matrix<TropicalNumber> G

Matrix<TropicalNumber> A

Returns:

Pair<Matrix<TropicalNumber>,Array<Set<Int>>>

---

monomial_cone_lattice(Matrix M)

computes the VIF of a monomial tropical cone given by generators

Parameters:

Matrix M: the exponent vectors of the generators.

Returns:

PartiallyOrderedSet<BasicDecoration,Nonsequential>

---

monomial_dual_description(Matrix monomial_generators)

compute the dual description of a monomial tropical cone.

Parameters:

Matrix monomial_generators

Returns:

Pair

---

nearest_point(Polytope<Addition,Scalar> C, Vector<TropicalNumber<Addition,Scalar>> x)

Compute the projection of a point x in tropical projective space onto a tropical cone C. Cf.

> Develin & Sturmfels math.MG/0308254v2, Proposition 9.

Parameters:

Polytope<Addition,Scalar> C

Vector<TropicalNumber<Addition,Scalar>> x

Returns:

Vector<TropicalNumber<Addition,Scalar>>

Example:

Note that the output is not homogenized, e.g. here (1,2,1) represents the point (0,1,0).

 > $C = new Polytope<Min>(POINTS=>[[0,0,0],[0,2,0],[0,1,2]]);
 > $x = new Vector<TropicalNumber<Min>>([0,2,1]);
 > print nearest_point($C, $x);
 1 2 1

---

norm(Vector<TropicalNumber<Addition,Scalar>> v)

The tropical norm of a vector v in tropical projective space is the difference between the maximal and minimal coordinate in any coordinate representation of the vector.

Parameters:

Vector<TropicalNumber<Addition,Scalar>> v

Returns:

Scalar

Example:

 > $v = new Vector<TropicalNumber<Min>>([1,-2,3]);
 > print norm($v);
 5

Example:

 > $w = new Vector<TropicalNumber<Min>>([0,'inf',3]);
 > print norm($w);
 inf

---

optimal_permutations(Matrix<TropicalNumber> matrix)

All tropically optimal permutations of a matrix (i.e. those yielding the tropical determinant).

Parameters:

Matrix<TropicalNumber> matrix

Returns:

Set<Array<Int>>

Example:

 > print optimal_permutations(new Matrix<TropicalNumber<Min>>([-1,-1,2],[0,-2,-2],[0,2,0]));
 {<0 1 2> <1 2 0>}

---

polynomial_support<Addition, Scalar>(Polynomial<TropicalNumber<Addition,Scalar>> p, Vector<TropicalNumber<Addition,Scalar>> pt)

Get the set of indices of a (tropical) polynomial `p` where the Min/Max is attained when evaluating at a given point `pt`.

Type Parameters:

Addition: Choose Min or Max

Scalar

Parameters:

Polynomial<TropicalNumber<Addition,Scalar>> p

Vector<TropicalNumber<Addition,Scalar>> pt

Returns:

Set<Int>

---

polynomial_vanishes<Addition, Scalar>(Polynomial<TropicalNumber<Addition,Scalar>> p, Vector<TropicalNumber<Addition,Scalar>> pt)

Check whether a tropical polynomial `p` vanishes at a point `pt`, i.e. attains its Min/Max twice.

Type Parameters:

Addition: Choose Min or Max

Scalar

Parameters:

Polynomial<TropicalNumber<Addition,Scalar>> p

Vector<TropicalNumber<Addition,Scalar>> pt

Returns:

Bool

---

principal_solution(Matrix<TropicalNumber> A, Vector<TropicalNumber> b)

Compute the solution of the tropical equation A * x = b. If there is no solution, the return value is 'near' a solution. Cf. Butkovic 'Max-linear systems: theory and algorithms' (MR2681232), Theorem 3.1.1

Parameters:

Matrix<TropicalNumber> A

Vector<TropicalNumber> b

Returns:

Vector<TropicalNumber>

Example:

 > $A = new Matrix<TropicalNumber<Min>>([[1,2],[3,4]]);
 > $b = new Vector<TropicalNumber<Min>>([5,6]);
 > print principal_solution($A, $b);
 4 3

---

second_tdet_and_perm(Matrix<TropicalNumber> matrix)

The second tropical optimum of a matrix and one corresponding permutation.

Parameters:

Matrix<TropicalNumber> matrix

Returns:

Pair<TropicalNumber,Array<Int>>

Example:

 > print second_tdet_and_perm(new Matrix<TropicalNumber<Min>>([[1,0,0],[0,1,0],[0,0,1]]));
 0 <1 2 0>

---

stregular(Matrix<TropicalNumber> matrix)

Signed tropical regularity of a matrix Returns, whether all optimal permutations have the same sign.

Parameters:

Matrix<TropicalNumber> matrix

Returns:

Bool

Example:

A regular matrix is also sign-regular

 > print stregular(new Matrix<TropicalNumber<Min>>([0,-1,2],[0,-2,-2],[0,2,0]));
 true

Example:

A sign-singular matrix

 > print stregular(new Matrix<TropicalNumber<Min>>([0,1,0],[1,0,1],[0,1,0]));
 false

---

subcramer(Matrix<TropicalNumber<Addition,Scalar>> m, Set<Int> J, Set<Int> I)

computes Cramer bracket |I| = |J| + 1 is required.

Parameters:

Matrix<TropicalNumber<Addition,Scalar>> m

Set<Int> J

Set<Int> I

Returns:

Vector<TropicalNumber<Addition,Scalar>>

---

tdet(Matrix<TropicalNumber> matrix)

The tropical determinant of a matrix. See also tdet_and_perm and second_tdet_and_perm.

Parameters:

Matrix<TropicalNumber> matrix

Returns:

TropicalNumber

Example:

 > print tdet(new Matrix<TropicalNumber<Max>>([[1,0,0],[0,1,0],[0,0,1]]));
 3

---

tdet_and_perm(Matrix<TropicalNumber> matrix)

The tropical determinant of a matrix and one optimal permutation.

Parameters:

Matrix<TropicalNumber> matrix

Returns:

Pair<TropicalNumber,Array<Int>>

Example:

 > print tdet_and_perm(new Matrix<TropicalNumber<Min>>([[1,0,0],[0,1,0],[0,0,1]]));
 0 <2 0 1>

---

tdet_and_perms(Matrix<TropicalNumber> matrix)

The tropical determinant of a matrix and all optimal permutations.

Parameters:

Matrix<TropicalNumber> matrix

Returns:

Pair<TropicalNumber,Set<Array<Int>>>

---

tdiam(Matrix<TropicalNumber<Addition,Scalar>> matrix)

Tropical diameter of a simplex, defined by the columns of a matrix. This is the maximum over the pairwise tropical distances. The same for Min and Max.

Parameters:

Matrix<TropicalNumber<Addition,Scalar>> matrix

Returns:

Scalar

Example:

 > print tdiam(new Matrix<TropicalNumber<Max>>([[1,0,0],[0,1,0],[0,0,1]]));
 2

---

tdist(Vector<TropicalNumber<Addition,Scalar>> v, Vector<TropicalNumber<Addition,Scalar>> w)

Tropical distance function. This is a metric on the tropical projective torus. The same for Min and Max.

Parameters:

Vector<TropicalNumber<Addition,Scalar>> v

Vector<TropicalNumber<Addition,Scalar>> w

Returns:

Scalar

Example:

 > $v=new Vector<TropicalNumber<Min>>([1,0]);
 > $w=new Vector<TropicalNumber<Min>>([0,1]);
 > print tdist($v,$w);
 2

---

tregular(Matrix<TropicalNumber> matrix)

Tropical regularity of a matrix

Parameters:

Matrix<TropicalNumber> matrix

Returns:

Bool

Example:

A tropically regular matrix

 > print tregular(new Matrix<TropicalNumber<Min>>([0,-1,2],[0,-2,-2],[0,2,0]));
 true

Example:

A tropically singular matrix

 > print tregular(new Matrix<TropicalNumber<Min>>([-1,-1,2],[0,-2,-2],[0,2,0]));
 false

---

trop_witness<Addition, Scalar>(Matrix<TropicalNumber<Addition,Scalar>> m, Array<Int > t, Int start)

checks feasibility of tropical inequality system

Type Parameters:

Addition

Scalar

Parameters:

Matrix<TropicalNumber<Addition,Scalar>> m

Array<Int > t

Int start

Returns:

Vector<TropicalNumber<Addition,Scalar>>

trop_witness<Addition, Scalar>(Matrix<TropicalNumber<Addition,Scalar>> m, Array<Int > t, Int start)

checks feasibility of tropical inequality system

Type Parameters:

Addition

Scalar

Parameters:

Matrix<TropicalNumber<Addition,Scalar>> m

Array<Int > t

Int start

Returns:

Vector<TropicalNumber<Addition,Scalar>>

---

tsgn(Matrix<TropicalNumber> matrix)

The sign of a tropical determinant. Returns the sign of the unique optimal permutation if the matrix is tropically regular, otherwise 0.

Parameters:

Matrix<TropicalNumber> matrix

Returns:

Int

---